Abstract: Three data sets providing assistance and guidance of data processing using Kmasker plants. Also, we perform a comparison of Kmasker plants functionality with the KAT tool. This DOI holds input and output data of this analysis. Example_1 uses an Aegilops speltoides dataset and results show that tested repeat sequences have B chromosome origin. Example_2 uses the winter barley specific gene VRN-H2 and results show that it is absent in spring barley cultivar Morex. Example_3 uses the full barley gene set and compares winter and spring barley presence/absence. Related commands and updates of this tutorial are provided on GitHub in the tutorial section of Kmasker plants. For the most recent version of this tutorial please have a look to the project page (https://github.com/tschmutzer/kmasker).
License: CC BY-SA 4.0 (Creative Commons Attribution-ShareAlike)
DOI: 10.5447/ipk/2019/17
Content: 18 Directories 91 Files (488.8 MB)
| Example_1_Aegilops_speltoides | 2.7 MB |
| Example_2_Barley_VRN-H2 | 2.3 MB |
| Example_3_Barley_RefSeq_gene_space | 483.8 MB |
| CONTRIBUTOR: |
Sebastian Beier,
Chris Ulpinnis,
Markus Schwalbe,
Thomas Münch,
Uwe Scholz
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| CREATOR: |
Thomas Schmutzer
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| PUBLISHER: | e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany |
| SIZE: | 488.8 MB |
| SUBJECT: | Kmasker plants, Tutorial and training, Example data set, Comparison |