Citation: T. Schmutzer (2019-10-22): Tutorial with three data sets providing assistance and guidance of data processing using Kmasker plants. DOI:10.5447/ipk/2019/17

Abstract: Three data sets providing assistance and guidance of data processing using Kmasker plants. Also, we perform a comparison of Kmasker plants functionality with the KAT tool. This DOI holds input and output data of this analysis. Example_1 uses an Aegilops speltoides dataset and results show that tested repeat sequences have B chromosome origin. Example_2 uses the winter barley specific gene VRN-H2 and results show that it is absent in spring barley cultivar Morex. Example_3 uses the full barley gene set and compares winter and spring barley presence/absence. Related commands and updates of this tutorial are provided on GitHub in the tutorial section of Kmasker plants. For the most recent version of this tutorial please have a look to the project page (https://github.com/tschmutzer/kmasker).

License: CC BY-SA 4.0 (Creative Commons Attribution-ShareAlike)

DOI: 10.5447/ipk/2019/17

Content: 18 Directories 91 Files (488.8 MB)

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Metadata
CONTRIBUTOR:
Sebastian Beier, Chris Ulpinnis, Markus Schwalbe, Thomas Münch, Uwe Scholz [Show full information]
CREATOR:
Thomas Schmutzer [Show full information]
PUBLISHER: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
SIZE: 488.8 MB
SUBJECT: Kmasker plants, Tutorial and training, Example data set, Comparison
COVERAGE: none
DATE: Event: event
UPDATED: TimePoint: Tue Oct 22 13:03:53 CEST 2019
CREATED: TimePoint: Tue Oct 22 12:54:28 CEST 2019
LANGUAGE: en
RELATION: none
SOURCE: none
Revision: 2 - CreationDate: Tue Oct 22 12:54:28 CEST 2019 - RevisionDate: Tue Oct 22 13:03:53 CEST 2019