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  • Citation: D. Pflugfelder (2017-07-10): 3D Magnetic resonance images of three weeks old barley roots grown in different soils. DOI:10.5447/IPK/2017/10
  • Abstract: This dataset contains the raw data for the publication: ‘D. Pflugfelder, R. Metzner, D. van Dusschoten, R. Reichel, S. Jahnke, R. Koller: Non-invasive imaging of plant roots in different soils using Magnetic Resonance Imaging (MRI)’ submitted to Plant Methods. Barley (Hordeum vulgare L. var Barke) plants (N=4) were cultivated in seven different substrates as detailed in the file ‘PlantIDs.xlsx’. Three weeks after sowing, the plant roots were imaged using MRI and subsequently harvested, scanned and analysed with WinRhizo. Both 3D MRI data and corresponding scanned images of the excavated roots are supplied. MRI acquisition parameters: 4.7T MRI equipped with a Varian console; Sequence: Spin Echo Multi-Slice (SEMS), TR=2850ms, Bandwidth BW=156kHz, Echo Time TE=9ms, two averages. Resolution: 0.5x0.5x1.0mm3. The 3D MRI data is supplied in the Nifti-file format, consisting of a header (*.hdr) and a data file (*.img). Furthermore, for each plant a maximum intensity projection is added as a preview image (*.tif).
  • License: CC BY 4.0 (Creative Commons Attribution)
  • DOI: 10.5447/IPK/2017/10

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//d.pflugfelder@gmx.de/3D Magnetic resonance images of three weeks old barley roots grown in different soils

//d.pflugfelder@gmx.de/3D Magnetic resonance images of three weeks old barley roots grown in different soils

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CHECKSUM: none CONTRIBUTOR: Ralf Metzner, Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, , Wilhelm-Johnen- Str., Jülich, 06466, Germany;
Dagmar van Dusschoten, Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, , Wilhelm-Johnen- Str., Jülich, 06466, Germany;
Rüdiger Reichel, Institute of Bio- and Geosciences, IBG-3: Agrosphere, Forschungszentrum Jülich GmbH, , Wilhelm-Johnen- Str., Jülich, 06466, Germany;
Siegfried Jahnke, Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, , Wilhelm-Johnen- Str., Jülich, 06466, Germany;
Robert Koller, Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, , Wilhelm-Johnen- Str., Jülich, 06466, Germany
COVERAGE: none CREATOR: Daniel Pflugfelder, Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, , Wilhelm-Johnen- Str., Jülich, 52425 , Germany
DATE: Event: event
UPDATED: TimePoint: Mon Jul 10 15:35:09 CEST 2017
CREATED: TimePoint: Mon Jul 10 14:04:53 CEST 2017
DESCRIPTION: This dataset contains the raw data for the publication: ‘D. Pflugfelder, R. Metzner, D. van Dusschoten, R. Reichel, S. Jahnke, R. Koller: Non-invasive imaging of plant roots in different soils using Magnetic Resonance Imaging (MRI)’ submitted to Plant Methods. Barley (Hordeum vulgare L. var Barke) plants (N=4) were cultivated in seven different substrates as detailed in the file ‘PlantIDs.xlsx’. Three weeks after sowing, the plant roots were imaged using MRI and subsequently harvested, scanned and analysed with WinRhizo. Both 3D MRI data and corresponding scanned images of the excavated roots are supplied. MRI acquisition parameters: 4.7T MRI equipped with a Varian console; Sequence: Spin Echo Multi-Slice (SEMS), TR=2850ms, Bandwidth BW=156kHz, Echo Time TE=9ms, two averages. Resolution: 0.5x0.5x1.0mm3. The 3D MRI data is supplied in the Nifti-file format, consisting of a header (*.hdr) and a data file (*.img). Furthermore, for each plant a maximum intensity projection is added as a preview image (*.tif).
FORMAT: none IDENTIFIER: Unknown_ID
LANGUAGE: en PUBLISHER: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
RELATION: none RIGHTS: CC BY 4.0 (Creative Commons Attribution)
SIZE: 5 SOURCE: none
SUBJECT: MRI, 3D images, Barley, roots, Phenotyping TITLE: 3D Magnetic resonance images of three weeks old barley roots grown in different soils
TYPE: directory