Citation: T. Schmutzer (2020-04-29): SNP matrix and read alignment from 1420 lines of the barley HEB-25 population for candidate gene rec8. DOI:10.5447/ipk/2020/20

Abstract: Data is provided in two directories ‘01_alignment’ and ‘02_variants_rec8’. Sequence data was aligned to the barley genome reference of cultivar ‘Morex’ in version 2 published by Monat et al., 2019 (DOI: https://doi.org/10.1186/s13059-019-1899-5). The alignment was constructed using BWA mem published by Li 2013 (DOI: http://arxiv.org/abs/1303.3997). SNP variants were detected with Freebayes published by Garrison and Marth 2012 (DOI: http://arxiv.org/abs/1207.3907). The gene ID of the target candidate gene rec8 is ‘HORVU.MOREX.r2.1HG0075790’.

License: CC BY-SA 4.0 (Creative Commons Attribution-ShareAlike)

DOI: 10.5447/ipk/2020/20