Citation: T. Schmutzer (2020-04-29): ALN_HEB-25_exome_capture_REGION_rec8.sort.bam. Size: 13.5 MB

Abstract: Data is provided in two directories ‘01_alignment’ and ‘02_variants_rec8’. Sequence data was aligned to the barley genome reference of cultivar ‘Morex’ in version 2 published by Monat et al., 2019 (DOI: https://doi.org/10.1186/s13059-019-1899-5). The alignment was constructed using BWA mem published by Li 2013 (DOI: http://arxiv.org/abs/1303.3997). SNP variants were detected with Freebayes published by Garrison and Marth 2012 (DOI: http://arxiv.org/abs/1207.3907). The gene ID of the target candidate gene rec8 is ‘HORVU.MOREX.r2.1HG0075790’.

License: CC BY-SA 4.0 (Creative Commons Attribution-ShareAlike)

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//schmutzr@IPK-GATERSLEBEN.DE/SNP matrix and read alignment from 1420 lines of the barley HEB-25 population for candidate gene rec8./01_alignment/ALN_HEB-25_exome_capture_REGION_rec8.sort.bam
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CONTRIBUTOR:
Steven Dreissig, Klaus Pillen [Show full information]
CREATOR:
Thomas Schmutzer [Show full information]
PUBLISHER: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
SIZE: 13.5 MB
SUBJECT: HEB-25, Hordeum spontaneum, NAM population, barley
CHECKSUM: SHA-256 : 24669831bd16d5652b476a5354ff33159f1637af12e2f999e28a11968f12bfa3
COVERAGE: none
DATE: Event: event
UPDATED: TimePoint: Wed Apr 29 17:11:25 CEST 2020
CREATED: TimePoint: Wed Apr 29 17:11:25 CEST 2020
FORMAT: application/gzip
LANGUAGE: en
RELATION: none
SOURCE: none
Revision: 1 - CreationDate: Wed Apr 29 17:11:25 CEST 2020 - RevisionDate: Wed Apr 29 17:11:28 CEST 2020