Citation: N. Bernhardt et al. (2019-11-13): Genomic and phylogenetic data for the identification of ancient and recurrent hybridizations in wheat taxa. DOI:10.5447/ipk/2019/18

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Abstract: Genomic data from 244 loci for 69 accessions representing the diploid Aegilops and Triticum species, as well as some diploid Hordeum species as outgroup (Dataset_S1). The associated 244 maximum likelihood gene trees in Newick format are rooted with the outgroup and branches with bootstrap values below 10 were collapsed (Dataset_S2). Raw GBS data for 57 accessions representing all diploid species from the genera Aegilops, Triticum, as well as Dasypyrum villosum and Taeniatherum caput-medusae as outgroup species (Dataset_S3).

License: CC BY 4.0 (Creative Commons Attribution)

DOI: 10.5447/ipk/2019/18

Content: 2 Directories 50567 Files (9.8 GB)

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//bernhardt@IPK-GATERSLEBEN.DE/Genomic and phylogenetic data for the identification of ancient and recurrent hybridizations in wheat taxa/Dataset_S3_GBS [0 Directories 58 Files]
Aegilops_bicornis_AE106.fastq.gz 121.7 MB
Aegilops_bicornis_AE1079.fastq.gz 94.8 MB
Aegilops_bicornis_AE788.fastq.gz 108.8 MB
Aegilops_comosa_AE1255.fastq.gz 115.6 MB
Aegilops_comosa_AE783.fastq.gz 175.1 MB
Aegilops_comosa_PI276970.fastq.gz 131.1 MB
Aegilops_longissima_AE133.fastq.gz 157.3 MB
Aegilops_longissima_AE417.fastq.gz 129.9 MB
Aegilops_longissima_PI604141.fastq.gz 141.6 MB
Aegilops_longissima_TA1921.fastq.gz 113.9 MB
Aegilops_markgrafii_KP2012106.fastq.gz 148 MB
Aegilops_markgrafii_PI254863.fastq.gz 176.9 MB
Aegilops_markgrafii_PI542208.fastq.gz 162.2 MB
Aegilops_markgrafii_PI596287.fastq.gz 153.6 MB
Aegilops_searsii_AE1072.fastq.gz 123.4 MB
Aegilops_searsii_AE1075.fastq.gz 163.1 MB
Aegilops_searsii_AE1083.fastq.gz 90.5 MB
Aegilops_searsii_PI599142.fastq.gz 170 MB
Aegilops_sharonensis_AE1203.fastq.gz 145.9 MB
Aegilops_sharonensis_AE323.fastq.gz 92.8 MB
Aegilops_speltoides_AE1065.fastq.gz 147.1 MB
Aegilops_speltoides_AE517.fastq.gz 99.1 MB
Aegilops_speltoides_AE684.fastq.gz 168.8 MB
Aegilops_speltoides_AE739.fastq.gz 71.6 MB
Aegilops_speltoides_AE921.fastq.gz 153.4 MB
Aegilops_speltoides_PI487238.fastq.gz 120.9 MB
Aegilops_tauschii_AE279.fastq.gz 136.1 MB
Aegilops_tauschii_AE525.fastq.gz 195.4 MB
Aegilops_tauschii_AE527.fastq.gz 143 MB
Aegilops_tauschii_AE956.fastq.gz 139.6 MB
Aegilops_umbellulata_AE153.fastq.gz 155.7 MB
Aegilops_umbellulata_AE740.fastq.gz 111.9 MB
Aegilops_umbellulata_PI573516.fastq.gz 131.7 MB
Aegilops_uniaristata_AE157.fastq.gz 108.6 MB
Aegilops_uniaristata_AE680.fastq.gz 154.6 MB
Aegilops_uniaristata_PI374326.fastq.gz 124.5 MB
Aegilops_uniaristata_PI554418.fastq.gz 154.1 MB
Amblyopyrum_muticum_PI560122.fastq.gz 124.6 MB
Amblyopyrum_muticum_PI560124.fastq.gz 119.1 MB
Amblyopyrum_muticum_PI560125.fastq.gz 145.9 MB
Amblyopyrum_muticum_PI560126.fastq.gz 128.6 MB
Dasypyrum_villosum_FG_NC_10_6.fastq.gz 176.3 MB
Dasypyrum_villosum_FG_NC_11_12.fastq.gz 152 MB
Dasypyrum_villosum_FG_NC_1_14.fastq.gz 311.5 MB
Dasypyrum_villosum_FG_NC_2_11.fastq.gz 252 MB
Matrix_wheat_wild_relatives.nex 729.4 MB
Taeniatherum_caput_medusae_CK2011.fastq.gz 171.8 MB
Taeniatherum_caput_medusae_GRA1126.fastq.gz 160.7 MB
Taeniatherum_caput_medusae_PI220589.fastq.gz 107.9 MB
Taeniatherum_caput_medusae_PI251387.fastq.gz 168.7 MB
Triticum_monococcum_TRI13061.fastq.gz 131.2 MB
Triticum_monococcum_TRI13612.fastq.gz 116.3 MB
Triticum_monococcum_TRI1990.fastq.gz 121.2 MB
Triticum_monococcum_TRI2009.fastq.gz 110 MB
Triticum_urartu_TRI17148.fastq.gz 95.2 MB
Triticum_urartu_TRI17159.fastq.gz 81.5 MB
Triticum_urartu_TRI17921.fastq.gz 107 MB
Triticum_urartu_TRI18407.fastq.gz 113.2 MB
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Metadata
CONTRIBUTOR:
Xue Dong, Eva-Maria Willing, C. Hart Poskar, Benjamin Kilian, Frank Blattner [Show full information]
CREATOR:
Nadine Bernhardt, Jonathan Brassac [Show full information]
PUBLISHER: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
SIZE: 8.5 GB
SUBJECT: Aegilops, Amblyopyrum, crop wild relatives, evolution, genotyping-by-sequencing, hybridization, nuclear single-copy genes, target-enrichment, phylogeny, Triticum, wheat
COVERAGE: none
DATE: Event: event
UPDATED: TimePoint: Wed Nov 13 14:21:33 CET 2019
CREATED: TimePoint: Wed Nov 13 14:21:33 CET 2019
LANGUAGE: en
RELATION: none
SOURCE: none
Revision: 0 - CreationDate: Wed Nov 13 14:21:33 CET 2019 - RevisionDate: Wed Nov 13 14:21:33 CET 2019