Abstract: Example files generated in the TRITEX assembly pipeline. These files were generated using the input datasets of maize B73 downloaded from NCBI SRA with accession numbers SRR11606869 and PRJNA391551. The reference guide map was generated using the RefGen_v5 genome of maize B73 (accession number GCA_000005005.1). The marker guide map was generated using the set of markers from the linkage map of the Intermated B73 x Mo17 (IBM) population (doi:10.1371/journal.pone.0028334). Some files are provided in RDS format (serialized R object), which can be loaded in R; others are CSV files. More details on README.txt and on the TRITEX long-read paper.
License: CC BY 4.0 (Creative Commons Attribution)
DOI: 10.5447/ipk/2022/20
Content: 2 Directories 28 Files (4.4 GB)
| CONTRIBUTOR: |
Martin Mascher
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| CREATOR: |
Marina Püpke Marone
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| PUBLISHER: | Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany |
| SIZE: | 4.4 GB |
| SUBJECT: | genome assembly, long-reads, chromosome conformation capture sequencing, genetic map, pan-genome |