Abstract: DNA sequence file in FASTA format for chromosomal pseudomolecules of barley (Hordeum vulgare) cv. Morex. This is the second release (Morex V2) of the Morex genome sequence assembly, improving on the Morex V1 release by Mascher et al. 2017, Nature [doi:10.1038/nature22043]. Sequence assembly was performed with the TRITEX pipeline (https://tritexassembly.bitbucket.io). Intermediate results (unitig, scaffold and super-scaffold sequences) are provided in the folder 'contig_and_scaffold_sequences'. The folder 'gene_annotation' holds the structural gene annotation of the Morex V2 assembly: gene models in GFF3 format, their functional descriptions as well as coding and protein sequences of high- and low-confidence genes. The folder 'repeat annotation' contains GFF files specifying the positions of transposable elements and tandem repeats. A table with the approximate centromere positions is found in the folder 'centromere_positions'.
License: CC BY 4.0 (Creative Commons Attribution)
DOI: 10.5447/ipk/2019/8
Content: 4 Directories 22 Files (22.4 GB)
| CONTRIBUTOR: | |
| CREATOR: |
Martin Mascher
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| PUBLISHER: | e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany |
| SIZE: | 4.1 GB |
| SUBJECT: | barley, Hordeum vulgare, genome sequence asssembly, reference genome sequence, short-read assembly, gene annotation, repetitive elements |