Citation: M. Mascher (2019-05-09): Pseudomolecules and annotation of the second version of the reference genome sequence assembly of barley cv. Morex [Morex V2]. DOI:10.5447/ipk/2019/8

Abstract: DNA sequence file in FASTA format for chromosomal pseudomolecules of barley (Hordeum vulgare) cv. Morex. This is the second release (Morex V2) of the Morex genome sequence assembly, improving on the Morex V1 release by Mascher et al. 2017, Nature [doi:10.1038/nature22043]. Sequence assembly was performed with the TRITEX pipeline (https://tritexassembly.bitbucket.io). Intermediate results (unitig, scaffold and super-scaffold sequences) are provided in the folder 'contig_and_scaffold_sequences'. The folder 'gene_annotation' holds the structural gene annotation of the Morex V2 assembly: gene models in GFF3 format, their functional descriptions as well as coding and protein sequences of high- and low-confidence genes. The folder 'repeat annotation' contains GFF files specifying the positions of transposable elements and tandem repeats. A table with the approximate centromere positions is found in the folder 'centromere_positions'.

License: CC BY 4.0 (Creative Commons Attribution)

DOI: 10.5447/ipk/2019/8

Content: 4 Directories 22 Files (22.4 GB)

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//mascher@IPK-GATERSLEBEN.DE/Pseudomolecules and annotation of the second version of the reference genome sequence assembly of barley cv. Morex [Morex V2]/contig_and_scaffold_sequences/4_10x_super_scaffolds.fasta
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CONTRIBUTOR:
CREATOR:
Martin Mascher [Show full information]
PUBLISHER: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
SIZE: 4.4 GB
SUBJECT: barley, Hordeum vulgare, genome sequence asssembly, reference genome sequence, short-read assembly, gene annotation, repetitive elements
CHECKSUM: SHA-256 : a5e0577b89e4ab773dd1b1e4907b12def309063392ae71b802fa1e6127991b61
COVERAGE: none
DATE: Event: event
CREATED: TimePoint: Thu May 09 09:09:55 CEST 2019
UPDATED: TimePoint: Thu May 09 09:13:39 CEST 2019
FORMAT: text/plain
LANGUAGE: en
RELATION: none
SOURCE: none
Revision: 1 - CreationDate: Thu May 09 09:09:55 CEST 2019 - RevisionDate: Thu May 09 09:17:43 CEST 2019