Citation: M. Mascher (2019-09-16): Source code of the TRITEX assembly pipeline. DOI:10.5447/ipk/2019/19
Abstract: Source code of the TRITEX pipeline for chromosome-scale assembly of Triticeae genomes. The most recent source code version is accessible from a public Bitbucket repository (https://bitbucket.org/tritexassembly/tritexassembly.bitbucket.io). This DOI holds the source code as of September 16th 2019 (commit: 7041ff2). A detailed usage guide can be found here: https://tritexassembly.bitbucket.io. The pipeline is described in the preprint Monat al. (2019) BioRxiv, https://doi.org/10.1101/631648.
License: CC BY 4.0 (Creative Commons Attribution)
DOI: 10.5447/ipk/2019/19
Content: 4 Directories 43 Files (1.2 MB)
| deprecated_files | 687.6 KB |
| shell | 26.9 KB |
| R | 107.4 KB |
| miscellaneous | 38.2 KB |
| index.html | 277.5 KB |
| Makefile | 523 B |
| README.md | 496 B |
| logo.png | 75 KB |
| index.adoc | 56.1 KB |
| CONTRIBUTOR: | |
| CREATOR: |
Martin Mascher
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| PUBLISHER: | e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany |
| SIZE: | 1.2 MB |
| SUBJECT: | genome sequence asssembly, reference genome sequence, short-read assembly, source code, barley, Hordeum vulgare, wheat, Triticum spp., Triticeae |