Citation: M. Mascher (2022-11-01): TRITEX pipeline source code and documentation. DOI:10.5447/ipk/2022/28
Abstract: Source code and documentation of the TRITEX sequence assembly pipeline for plant genomes developed in the research group Domestication Genomics at the Leibniz Institute of Plant Genetics and Crop Research (IPK) Gatersleben. TRITEX has shell and R scripts and uses standard bioinformatics tools. The source is maintained in a Bitbucket repository (https://bitbucket.org/tritexassembly/tritexassembly.bitbucket.io/commits/). The version available here is commit c4c3fbd.
License: CC BY 4.0 (Creative Commons Attribution)
DOI: 10.5447/ipk/2022/28
Content: 4 Directories 55 Files (4.5 MB)
| CONTRIBUTOR: |
Marina Marone
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| CREATOR: |
Martin Mascher
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| PUBLISHER: | Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany |
| SIZE: | 10.2 KB |
| SUBJECT: | genome assembly, long-reads, chromosome conformation capture sequencing, genetic map, pangenome |