Citation: M. Mascher (2015-01-23): Barley_HighConfidences_Genes_ORFs_near_complete.gff. Size: 21.4 MB

Abstract: To avoid annotation artifacts due to fragmented gene models, we generated a GFF files of barley genes (PMID: 23075845) whose protein sequences is nearly completely represented in the Morex WGS assembly. Protein sequences were aligned to the genomic contigs with exonerate (PMID: 15713233). Genes were considered near-complete if 98 % of their protein sequences could be aligned to the genomic sequence. A total of 18,039 (74 %) out of 24,243 high-confidence genes positioned on the Morex WGS assembly had near-complete ORFs.

License: CC BY 4.0 (Creative Commons Attribution)

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//mascher@IPK-GATERSLEBEN.DE/Barley gene annotation file of near-complete high-confidence genes with open reading frame information/Barley_HighConfidences_Genes_ORFs_near_complete.gff
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Metadata
CONTRIBUTOR:
Matthias Pfeifer, Manuel Spannagl [Show full information]
CREATOR:
Martin Mascher [Show full information]
PUBLISHER: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
SIZE: 21.4 MB
SUBJECT: barley, genome annotation, general feature format (GFF), open reading frames
CHECKSUM: SHA-256 : c30c8764bfbe2eb2369c1c1904c3e16779b22f34a8ad986cf31a81556ea8e7e2
COVERAGE: none
DATE: Event: event
UPDATED: TimePoint: Fri Jan 23 10:56:47 CET 2015
CREATED: TimePoint: Fri Jan 23 10:56:47 CET 2015
FORMAT: text/plain
LANGUAGE: en
RELATION: none
SOURCE: none
Revision: 1 - CreationDate: Fri Jan 23 10:56:47 CET 2015 - RevisionDate: Fri Jan 23 10:56:52 CET 2015