Citation: M. Mascher (2020-09-02): Genomic analysis of wheat cytogenetic stocks for chromosome 1D. DOI:10.5447/ipk/2020/25

Abstract: Analysis of genomic deletions in cytogenetic stocks of bread wheat (Triticum aestivum) in background of cv. Chinese Spring. Counts of mapped reads in genotyping-by-sequencing (GBS) data of 14 genotypes was calculated in non-overlapping 1 Mb windows and normalized for library size (number of reads). Deletions were detected as contiguous regions having low coverage ratios relative to Chinese Spring control (column: ratio_sample_CS). One table is provided for each genotype. The IWGSC RefSeq V1.0 sequence assembly of Chinese Spring was used for this analysis.

License: CC BY 4.0 (Creative Commons Attribution)

DOI: 10.5447/ipk/2020/25