Citation: IBSC (2016-08-22): Data and procedures for the construction of the pseudomolecules of barley cv. Morex. DOI:10.5447/ipk/2016/19

Abstract: This folder contains the Unix shell (ZSH) and R source code that was used for reading in datasets providing positional information, constructing a BAC overlap graph and a HiC map, and combining this information to derive pseudomolecules sequences. See comments in the source code files for further explanations. Helper functions are provided in the subfolder "functions". Input data sets and processed data are found in the subfolders "data" and "processed_data", respectively.

License: CC BY 4.0 (Creative Commons Attribution)

DOI: 10.5447/ipk/2016/19

Content: 4 Directories 53 Files (4.2 GB)

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//braune@IPK-GATERSLEBEN.DE/Data and procedures for the construction of the pseudomolecules of barley cv. Morex/scripts/data/optical_map_alignment_Morex_150618_allBACs_clean_v2_naming_keyfile.txt
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CONTRIBUTOR:
CREATOR:
PUBLISHER: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
SIZE: 2.7 MB
SUBJECT: barley, Hordeum vulgare, genome assembly, genome annotation, sequence resource, next-generation sequencing
CHECKSUM: SHA-256 : 1212791606b66d1436a190dd6c38d9e5d149fb8ffa48d133bed47bc5cfe1f10e
COVERAGE: none
DATE: Event: event
CREATED: TimePoint: Mon Aug 22 14:56:32 CEST 2016
UPDATED: TimePoint: Mon Aug 22 14:56:38 CEST 2016
FORMAT: text/plain
LANGUAGE: en
RELATION: none
SOURCE: none
Revision: 1 - CreationDate: Mon Aug 22 14:56:32 CEST 2016 - RevisionDate: Mon Aug 22 15:00:48 CEST 2016