Abstract: This folder contains the Unix shell (ZSH) and R source code that was used for reading in datasets providing positional information, constructing a BAC overlap graph and a HiC map, and combining this information to derive pseudomolecules sequences. See comments in the source code files for further explanations. Helper functions are provided in the subfolder "functions". Input data sets and processed data are found in the subfolders "data" and "processed_data", respectively.
License: CC BY 4.0 (Creative Commons Attribution)
DOI: 10.5447/ipk/2016/19
Content: 4 Directories 53 Files (4.2 GB)
| BAC_overlap_cluster_construction.R | 4.7 KB |
| anchor_BACs.R | 6.4 KB |
| bacmerge.zsh | 4.9 KB |
| cluster_joining.R | 30.2 KB |
| hic_mapping_functions.R | 11.9 KB |
| read_datasets.R | 10.5 KB |
| CONTRIBUTOR: | |
| CREATOR: | |
| PUBLISHER: | e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany |
| SIZE: | 68.7 KB |
| SUBJECT: | barley, Hordeum vulgare, genome assembly, genome annotation, sequence resource, next-generation sequencing |