Citation: M. Mascher (2015-02-19): Barley_Diversity_panel_GBS_SNP_matrix.xlsx. Size: 13.1 MB
Abstract: Genotyping-by-sequnencing (GBS) libraries were constructed for 243 barley accession. Raw reads were trimmed with with cutadapt and mapped to the draft genome assembly of barley cultivar ‘Morex’ with BWA-MEM using default parameters. SNPs were called with SAMtools 0.1.19 and filtered with an AWK script. The minimum read depth for a successful genotype calls was 10. SNPs with more than 5 % missing genotype calls were discarded. The resultant genotype matrix is accessible here as an MS Excel file.
License: CC BY 4.0 (Creative Commons Attribution)
| CONTRIBUTOR: |
Axel Himmelbach,
Benjamin Kilian,
Nils Stein
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| CREATOR: |
Martin Mascher
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| PUBLISHER: | e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany |
| SIZE: | 13.1 MB |
| SUBJECT: | barley, single-nucleotide polymorphism, genotyping-by-sequencing, diversity panel |