Citation: M. Mascher (2020-09-02): read_counts_1DS-3.tsv. Size: 1.1 MB
Abstract: Analysis of genomic deletions in cytogenetic stocks of bread wheat (Triticum aestivum) in background of cv. Chinese Spring. Counts of mapped reads in genotyping-by-sequencing (GBS) data of 14 genotypes was calculated in non-overlapping 1 Mb windows and normalized for library size (number of reads). Deletions were detected as contiguous regions having low coverage ratios relative to Chinese Spring control (column: ratio_sample_CS). One table is provided for each genotype. The IWGSC RefSeq V1.0 sequence assembly of Chinese Spring was used for this analysis.
License: CC BY 4.0 (Creative Commons Attribution)
| CONTRIBUTOR: |
Natalia Tikhenko
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| CREATOR: |
Martin Mascher
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| PUBLISHER: | e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany |
| SIZE: | 1.1 MB |
| SUBJECT: | cytogenetic stocks, short-read mapping, genotyping-by-sequencing, Hordeum vulgare, wheat, Triticum aestivum, Triticeae |